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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-12-22, 16:22 PST based on data in:


        General Statistics

        Showing 0/96 rows and 2/6 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimapped
        BA12-S5_P
        18.6M
        17.3M
        92.6%
        15.9M
        85.1%
        1.4M
        BA12-S5_U
        3.5M
        3.3M
        93.0%
        3.0M
        83.8%
        0.3M
        BA12-WYS_P
        24.0M
        21.8M
        90.8%
        20.5M
        85.5%
        1.3M
        BA12-WYS_U
        4.0M
        3.6M
        91.1%
        3.4M
        84.7%
        0.3M
        BA12-gam_P
        20.5M
        18.0M
        87.9%
        15.8M
        77.3%
        2.2M
        BA12-gam_U
        3.8M
        3.3M
        86.7%
        2.9M
        76.0%
        0.4M
        BA14-S5_P
        24.1M
        20.2M
        83.9%
        18.2M
        75.7%
        2.0M
        BA14-S5_U
        4.3M
        3.6M
        84.9%
        3.2M
        75.7%
        0.4M
        BA14-WYS_P
        19.8M
        19.0M
        96.0%
        18.3M
        92.3%
        0.7M
        BA14-WYS_U
        3.1M
        3.0M
        96.5%
        2.8M
        91.3%
        0.2M
        BA14-gam_P
        22.1M
        16.7M
        75.9%
        13.9M
        62.9%
        2.9M
        BA14-gam_U
        4.4M
        3.3M
        74.3%
        2.7M
        62.1%
        0.5M
        BA19-S5_P
        25.1M
        23.1M
        92.0%
        22.0M
        87.8%
        1.1M
        BA19-S5_U
        3.3M
        3.0M
        92.5%
        2.9M
        86.7%
        0.2M
        BA19-WYS_P
        18.9M
        16.4M
        86.4%
        14.9M
        78.8%
        1.4M
        BA19-WYS_U
        3.9M
        3.4M
        86.4%
        3.1M
        78.0%
        0.3M
        BA19-gam_P
        22.6M
        12.0M
        53.0%
        8.5M
        37.7%
        3.5M
        BA19-gam_U
        4.9M
        2.4M
        48.1%
        1.7M
        34.0%
        0.7M
        BD5-S5_P
        16.2M
        15.1M
        93.6%
        14.1M
        87.2%
        1.0M
        BD5-S5_U
        3.0M
        2.8M
        94.0%
        2.5M
        86.0%
        0.2M
        BD5-WYS_P
        19.1M
        16.6M
        86.7%
        15.4M
        80.5%
        1.2M
        BD5-WYS_U
        3.8M
        3.3M
        87.3%
        3.1M
        79.9%
        0.3M
        BD5-gam_P
        24.5M
        16.9M
        69.1%
        11.1M
        45.2%
        5.9M
        BD5-gam_U
        4.5M
        2.7M
        60.2%
        1.8M
        40.7%
        0.9M
        BF5-S5_P
        17.1M
        15.3M
        89.3%
        13.7M
        79.7%
        1.6M
        BF5-S5_U
        3.2M
        2.8M
        89.4%
        2.5M
        78.5%
        0.3M
        BF5-WYS_P
        20.0M
        18.2M
        90.9%
        16.7M
        83.5%
        1.5M
        BF5-WYS_U
        3.6M
        3.2M
        90.7%
        2.9M
        82.4%
        0.3M
        BF5-gam_P
        21.2M
        17.4M
        82.2%
        15.6M
        73.9%
        1.8M
        BF5-gam_U
        4.9M
        4.0M
        82.1%
        3.6M
        72.8%
        0.5M
        BF16-S5_P
        27.0M
        21.4M
        79.3%
        17.7M
        65.7%
        3.7M
        BF16-S5_U
        4.8M
        3.5M
        74.2%
        2.9M
        61.3%
        0.6M
        BF16-WYS_P
        20.4M
        18.6M
        91.2%
        17.6M
        86.6%
        0.9M
        BF16-WYS_U
        3.7M
        3.4M
        91.8%
        3.2M
        85.8%
        0.2M
        BF16-gam_P
        25.5M
        17.6M
        69.1%
        11.4M
        44.7%
        6.2M
        BF16-gam_U
        4.8M
        2.9M
        60.0%
        1.9M
        40.0%
        1.0M
        Cross-S5-1_P
        21.9M
        19.4M
        88.6%
        17.7M
        80.9%
        1.7M
        Cross-S5-1_U
        4.0M
        3.6M
        88.7%
        3.2M
        80.0%
        0.3M
        Cross-S5-2_P
        23.1M
        21.3M
        92.1%
        19.7M
        85.3%
        1.6M
        Cross-S5-2_U
        4.0M
        3.7M
        92.2%
        3.4M
        84.2%
        0.3M
        Cross-S5-3_P
        19.0M
        15.3M
        80.3%
        13.7M
        72.1%
        1.6M
        Cross-S5-3_U
        3.7M
        2.9M
        80.5%
        2.6M
        71.6%
        0.3M
        Cross-WYS-1_P
        20.0M
        17.6M
        87.9%
        16.4M
        81.9%
        1.2M
        Cross-WYS-1_U
        4.0M
        3.5M
        88.5%
        3.2M
        81.4%
        0.3M
        Cross-WYS-2_P
        19.9M
        18.2M
        91.2%
        17.2M
        86.2%
        1.0M
        Cross-WYS-2_U
        3.1M
        2.8M
        91.6%
        2.6M
        85.5%
        0.2M
        Cross-WYS-3_P
        21.2M
        18.7M
        88.3%
        17.7M
        83.8%
        1.0M
        Cross-WYS-3_U
        3.8M
        3.4M
        89.0%
        3.2M
        83.2%
        0.2M
        Cross-gam-1_P
        18.5M
        16.3M
        88.2%
        14.5M
        78.5%
        1.8M
        Cross-gam-1_U
        3.4M
        3.0M
        87.4%
        2.6M
        76.9%
        0.4M
        Cross-gam-2_P
        18.8M
        17.9M
        94.9%
        16.5M
        87.6%
        1.4M
        Cross-gam-2_U
        3.6M
        3.4M
        94.9%
        3.1M
        86.1%
        0.3M
        Cross-gam-3_P
        17.0M
        16.3M
        95.8%
        15.3M
        90.0%
        1.0M
        Cross-gam-3_U
        2.5M
        2.4M
        95.9%
        2.2M
        88.3%
        0.2M
        RESUB-WT-WYS-4_P
        20.8M
        19.5M
        93.8%
        18.4M
        88.8%
        1.0M
        RESUB-WT-WYS-4_U
        3.4M
        3.3M
        94.4%
        3.0M
        87.8%
        0.2M
        RNAi-S5-1_P
        17.0M
        16.4M
        96.8%
        15.4M
        90.8%
        1.0M
        RNAi-S5-1_U
        3.4M
        3.3M
        97.8%
        3.0M
        89.5%
        0.3M
        RNAi-S5-2_P
        21.7M
        18.5M
        85.2%
        16.3M
        75.2%
        2.2M
        RNAi-S5-2_U
        4.1M
        3.6M
        86.8%
        3.0M
        73.9%
        0.5M
        RNAi-S5-3_P
        19.7M
        15.8M
        80.0%
        14.2M
        72.2%
        1.6M
        RNAi-S5-3_U
        3.3M
        2.7M
        81.9%
        2.4M
        72.0%
        0.3M
        RNAi-WYS-1_P
        19.6M
        16.7M
        85.3%
        15.7M
        80.3%
        1.0M
        RNAi-WYS-1_U
        3.1M
        2.7M
        85.9%
        2.5M
        79.8%
        0.2M
        RNAi-WYS-2_P
        20.1M
        16.4M
        81.5%
        15.3M
        76.2%
        1.1M
        RNAi-WYS-2_U
        3.4M
        2.8M
        81.8%
        2.5M
        75.6%
        0.2M
        RNAi-WYS-3_P
        24.7M
        20.9M
        84.5%
        19.4M
        78.6%
        1.5M
        RNAi-WYS-3_U
        4.8M
        4.1M
        85.2%
        3.8M
        78.5%
        0.3M
        RNAi-gam-1_P
        18.2M
        15.5M
        85.4%
        14.8M
        81.4%
        0.7M
        RNAi-gam-1_U
        3.2M
        2.8M
        86.4%
        2.6M
        81.3%
        0.2M
        RNAi-gam-2_P
        20.6M
        15.9M
        76.8%
        14.9M
        72.0%
        1.0M
        RNAi-gam-2_U
        3.8M
        2.9M
        77.5%
        2.7M
        71.9%
        0.2M
        RNAi-gam-3_P
        23.6M
        22.5M
        95.2%
        21.6M
        91.3%
        0.9M
        RNAi-gam-3_U
        4.1M
        4.0M
        96.2%
        3.7M
        91.0%
        0.2M
        WT-S5-1_P
        19.1M
        17.9M
        93.9%
        16.9M
        88.9%
        1.0M
        WT-S5-1_U
        4.0M
        3.8M
        94.8%
        3.6M
        88.0%
        0.3M
        WT-S5-2_P
        21.4M
        19.9M
        93.2%
        18.7M
        87.4%
        1.2M
        WT-S5-2_U
        4.0M
        3.8M
        93.7%
        3.5M
        86.5%
        0.3M
        WT-S5-3_P
        20.7M
        18.1M
        87.5%
        16.9M
        81.6%
        1.2M
        WT-S5-3_U
        3.2M
        2.8M
        87.3%
        2.5M
        79.8%
        0.2M
        WT-WYS-2_P
        18.9M
        18.2M
        96.3%
        17.5M
        92.9%
        0.7M
        WT-WYS-2_U
        3.5M
        3.4M
        97.3%
        3.2M
        92.3%
        0.2M
        WT-WYS-3_P
        19.2M
        18.4M
        96.0%
        17.7M
        92.4%
        0.7M
        WT-WYS-3_U
        3.4M
        3.3M
        96.8%
        3.1M
        91.6%
        0.2M
        WT-male-gam-1_P
        20.3M
        19.4M
        95.5%
        18.7M
        92.2%
        0.7M
        WT-male-gam-1_U
        3.5M
        3.4M
        96.7%
        3.2M
        92.0%
        0.2M
        WT-male-gam-2_P
        22.5M
        21.5M
        95.5%
        20.8M
        92.0%
        0.8M
        WT-male-gam-2_U
        3.2M
        3.1M
        96.2%
        3.0M
        91.4%
        0.2M
        WT-male-gam-3_P
        23.8M
        22.7M
        95.3%
        21.9M
        91.7%
        0.8M
        WT-male-gam-3_U
        3.8M
        3.6M
        96.1%
        3.5M
        91.2%
        0.2M
        WT-mature-herm-1_P
        22.0M
        15.2M
        68.9%
        11.0M
        50.1%
        4.1M
        WT-mature-herm-1_U
        4.1M
        2.5M
        61.7%
        1.9M
        46.4%
        0.6M
        WT-mature-herm-2_P
        19.4M
        14.3M
        73.4%
        12.7M
        65.3%
        1.6M
        WT-mature-herm-2_U
        3.1M
        2.3M
        73.3%
        2.0M
        65.1%
        0.3M
        WT-mature-herm-3_P
        23.7M
        15.7M
        66.2%
        10.7M
        45.2%
        5.0M
        WT-mature-herm-3_U
        5.0M
        2.9M
        58.3%
        2.1M
        41.8%
        0.8M

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 0/96 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        BA12-S5_P
        18.6M
        17.3M
        92.6%
        15.9M
        85.1%
        1.4M
        296.0bp
        295.2bp
        13.0M
        12.8M
        12.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA12-S5_U
        3.5M
        3.3M
        93.0%
        3.0M
        83.8%
        0.3M
        120.0bp
        120.4bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA12-WYS_P
        24.0M
        21.8M
        90.8%
        20.5M
        85.5%
        1.3M
        296.0bp
        295.0bp
        18.4M
        17.9M
        18.0M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA12-WYS_U
        4.0M
        3.6M
        91.1%
        3.4M
        84.7%
        0.3M
        121.0bp
        121.0bp
        1.2M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA12-gam_P
        20.5M
        18.0M
        87.9%
        15.8M
        77.3%
        2.2M
        295.0bp
        294.7bp
        12.3M
        12.0M
        12.1M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA12-gam_U
        3.8M
        3.3M
        86.7%
        2.9M
        76.0%
        0.4M
        120.0bp
        120.5bp
        0.8M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA14-S5_P
        24.1M
        20.2M
        83.9%
        18.2M
        75.7%
        2.0M
        296.0bp
        295.4bp
        14.1M
        13.7M
        13.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.3bp
        BA14-S5_U
        4.3M
        3.6M
        84.9%
        3.2M
        75.7%
        0.4M
        121.0bp
        120.9bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA14-WYS_P
        19.8M
        19.0M
        96.0%
        18.3M
        92.3%
        0.7M
        295.0bp
        294.9bp
        15.8M
        15.5M
        15.5M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA14-WYS_U
        3.1M
        3.0M
        96.5%
        2.8M
        91.3%
        0.2M
        121.0bp
        121.4bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA14-gam_P
        22.1M
        16.7M
        75.9%
        13.9M
        62.9%
        2.9M
        296.0bp
        295.1bp
        10.0M
        9.8M
        9.9M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA14-gam_U
        4.4M
        3.3M
        74.3%
        2.7M
        62.1%
        0.5M
        119.0bp
        118.9bp
        0.7M
        0.7M
        0.7M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA19-S5_P
        25.1M
        23.1M
        92.0%
        22.0M
        87.8%
        1.1M
        296.0bp
        295.1bp
        19.7M
        19.2M
        19.3M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        BA19-S5_U
        3.3M
        3.0M
        92.5%
        2.9M
        86.7%
        0.2M
        121.0bp
        121.4bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.5bp
        0.0%
        1.2bp
        BA19-WYS_P
        18.9M
        16.4M
        86.4%
        14.9M
        78.8%
        1.4M
        296.0bp
        295.0bp
        13.4M
        13.1M
        13.2M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BA19-WYS_U
        3.9M
        3.4M
        86.4%
        3.1M
        78.0%
        0.3M
        119.0bp
        119.1bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.3bp
        BA19-gam_P
        22.6M
        12.0M
        53.0%
        8.5M
        37.7%
        3.5M
        297.0bp
        295.8bp
        5.9M
        5.7M
        5.7M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.4bp
        BA19-gam_U
        4.9M
        2.4M
        48.1%
        1.7M
        34.0%
        0.7M
        124.0bp
        124.1bp
        0.5M
        0.4M
        0.4M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.5bp
        BD5-S5_P
        16.2M
        15.1M
        93.6%
        14.1M
        87.2%
        1.0M
        296.0bp
        295.7bp
        12.0M
        11.8M
        11.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BD5-S5_U
        3.0M
        2.8M
        94.0%
        2.5M
        86.0%
        0.2M
        118.0bp
        118.6bp
        0.8M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BD5-WYS_P
        19.1M
        16.6M
        86.7%
        15.4M
        80.5%
        1.2M
        296.0bp
        295.4bp
        13.2M
        12.9M
        13.0M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BD5-WYS_U
        3.8M
        3.3M
        87.3%
        3.1M
        79.9%
        0.3M
        120.0bp
        119.7bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BD5-gam_P
        24.5M
        16.9M
        69.1%
        11.1M
        45.2%
        5.9M
        296.0bp
        295.8bp
        7.9M
        7.7M
        7.8M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.4bp
        BD5-gam_U
        4.5M
        2.7M
        60.2%
        1.8M
        40.7%
        0.9M
        123.0bp
        124.5bp
        0.5M
        0.5M
        0.5M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.6bp
        BF5-S5_P
        17.1M
        15.3M
        89.3%
        13.7M
        79.7%
        1.6M
        296.0bp
        295.8bp
        11.4M
        11.2M
        11.2M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF5-S5_U
        3.2M
        2.8M
        89.4%
        2.5M
        78.5%
        0.3M
        119.0bp
        118.8bp
        0.8M
        0.7M
        0.8M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.3bp
        BF5-WYS_P
        20.0M
        18.2M
        90.9%
        16.7M
        83.5%
        1.5M
        296.0bp
        294.9bp
        13.6M
        13.2M
        13.3M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF5-WYS_U
        3.6M
        3.2M
        90.7%
        2.9M
        82.4%
        0.3M
        121.0bp
        121.4bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.3bp
        BF5-gam_P
        21.2M
        17.4M
        82.2%
        15.6M
        73.9%
        1.8M
        296.0bp
        295.4bp
        11.6M
        11.3M
        11.5M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF5-gam_U
        4.9M
        4.0M
        82.1%
        3.6M
        72.8%
        0.5M
        119.0bp
        119.4bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF16-S5_P
        27.0M
        21.4M
        79.3%
        17.7M
        65.7%
        3.7M
        297.0bp
        296.2bp
        15.4M
        15.1M
        15.2M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.4bp
        BF16-S5_U
        4.8M
        3.5M
        74.2%
        2.9M
        61.3%
        0.6M
        125.0bp
        124.8bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.5bp
        0.0%
        1.4bp
        BF16-WYS_P
        20.4M
        18.6M
        91.2%
        17.6M
        86.6%
        0.9M
        296.0bp
        295.4bp
        15.9M
        15.5M
        15.6M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF16-WYS_U
        3.7M
        3.4M
        91.8%
        3.2M
        85.8%
        0.2M
        120.0bp
        119.7bp
        1.1M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        BF16-gam_P
        25.5M
        17.6M
        69.1%
        11.4M
        44.7%
        6.2M
        296.0bp
        295.8bp
        7.8M
        7.5M
        7.6M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.6bp
        BF16-gam_U
        4.8M
        2.9M
        60.0%
        1.9M
        40.0%
        1.0M
        123.0bp
        124.2bp
        0.5M
        0.5M
        0.5M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.8bp
        Cross-S5-1_P
        21.9M
        19.4M
        88.6%
        17.7M
        80.9%
        1.7M
        296.0bp
        294.9bp
        14.9M
        14.5M
        14.7M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-S5-1_U
        4.0M
        3.6M
        88.7%
        3.2M
        80.0%
        0.3M
        120.0bp
        120.0bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-S5-2_P
        23.1M
        21.3M
        92.1%
        19.7M
        85.3%
        1.6M
        296.0bp
        295.1bp
        17.1M
        16.7M
        16.8M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-S5-2_U
        4.0M
        3.7M
        92.2%
        3.4M
        84.2%
        0.3M
        121.0bp
        121.1bp
        1.1M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-S5-3_P
        19.0M
        15.3M
        80.3%
        13.7M
        72.1%
        1.6M
        296.0bp
        295.2bp
        12.1M
        11.9M
        12.0M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-S5-3_U
        3.7M
        2.9M
        80.5%
        2.6M
        71.6%
        0.3M
        119.0bp
        119.5bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-1_P
        20.0M
        17.6M
        87.9%
        16.4M
        81.9%
        1.2M
        296.0bp
        295.2bp
        15.0M
        14.7M
        14.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-1_U
        4.0M
        3.5M
        88.5%
        3.2M
        81.4%
        0.3M
        119.0bp
        119.4bp
        1.1M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-2_P
        19.9M
        18.2M
        91.2%
        17.2M
        86.2%
        1.0M
        296.0bp
        295.4bp
        15.6M
        15.3M
        15.4M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-2_U
        3.1M
        2.8M
        91.6%
        2.6M
        85.5%
        0.2M
        120.0bp
        120.4bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-3_P
        21.2M
        18.7M
        88.3%
        17.7M
        83.8%
        1.0M
        296.0bp
        295.3bp
        16.9M
        16.5M
        16.6M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-WYS-3_U
        3.8M
        3.4M
        89.0%
        3.2M
        83.2%
        0.2M
        120.0bp
        119.8bp
        1.2M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-1_P
        18.5M
        16.3M
        88.2%
        14.5M
        78.5%
        1.8M
        296.0bp
        294.9bp
        12.6M
        12.3M
        12.4M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-1_U
        3.4M
        3.0M
        87.4%
        2.6M
        76.9%
        0.4M
        121.0bp
        121.2bp
        0.9M
        0.8M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-2_P
        18.8M
        17.9M
        94.9%
        16.5M
        87.6%
        1.4M
        296.0bp
        295.3bp
        15.0M
        14.8M
        14.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-2_U
        3.6M
        3.4M
        94.9%
        3.1M
        86.1%
        0.3M
        120.0bp
        120.2bp
        1.1M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-3_P
        17.0M
        16.3M
        95.8%
        15.3M
        90.0%
        1.0M
        295.0bp
        295.0bp
        14.1M
        13.8M
        13.8M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        Cross-gam-3_U
        2.5M
        2.4M
        95.9%
        2.2M
        88.3%
        0.2M
        121.0bp
        121.7bp
        0.8M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RESUB-WT-WYS-4_P
        20.8M
        19.5M
        93.8%
        18.4M
        88.8%
        1.0M
        296.0bp
        295.3bp
        16.5M
        16.2M
        16.2M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RESUB-WT-WYS-4_U
        3.4M
        3.3M
        94.4%
        3.0M
        87.8%
        0.2M
        120.0bp
        120.2bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-S5-1_P
        17.0M
        16.4M
        96.8%
        15.4M
        90.8%
        1.0M
        296.0bp
        294.9bp
        12.2M
        11.8M
        12.0M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-S5-1_U
        3.4M
        3.3M
        97.8%
        3.0M
        89.5%
        0.3M
        120.0bp
        119.8bp
        0.9M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-S5-2_P
        21.7M
        18.5M
        85.2%
        16.3M
        75.2%
        2.2M
        296.0bp
        295.2bp
        14.3M
        13.9M
        14.1M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-S5-2_U
        4.1M
        3.6M
        86.8%
        3.0M
        73.9%
        0.5M
        120.0bp
        120.1bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        RNAi-S5-3_P
        19.7M
        15.8M
        80.0%
        14.2M
        72.2%
        1.6M
        296.0bp
        295.8bp
        11.7M
        11.4M
        11.5M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-S5-3_U
        3.3M
        2.7M
        81.9%
        2.4M
        72.0%
        0.3M
        119.0bp
        119.5bp
        0.7M
        0.7M
        0.7M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        RNAi-WYS-1_P
        19.6M
        16.7M
        85.3%
        15.7M
        80.3%
        1.0M
        296.0bp
        295.2bp
        14.4M
        14.1M
        14.1M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-WYS-1_U
        3.1M
        2.7M
        85.9%
        2.5M
        79.8%
        0.2M
        120.0bp
        120.1bp
        0.9M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-WYS-2_P
        20.1M
        16.4M
        81.5%
        15.3M
        76.2%
        1.1M
        296.0bp
        294.9bp
        13.8M
        13.5M
        13.6M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-WYS-2_U
        3.4M
        2.8M
        81.8%
        2.5M
        75.6%
        0.2M
        121.0bp
        120.9bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-WYS-3_P
        24.7M
        20.9M
        84.5%
        19.4M
        78.6%
        1.5M
        296.0bp
        295.7bp
        16.7M
        16.3M
        16.4M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-WYS-3_U
        4.8M
        4.1M
        85.2%
        3.8M
        78.5%
        0.3M
        118.0bp
        118.6bp
        1.2M
        1.2M
        1.2M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-gam-1_P
        18.2M
        15.5M
        85.4%
        14.8M
        81.4%
        0.7M
        296.0bp
        295.2bp
        13.7M
        13.4M
        13.5M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.3bp
        RNAi-gam-1_U
        3.2M
        2.8M
        86.4%
        2.6M
        81.3%
        0.2M
        120.0bp
        120.2bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        RNAi-gam-2_P
        20.6M
        15.9M
        76.8%
        14.9M
        72.0%
        1.0M
        296.0bp
        294.9bp
        12.7M
        12.3M
        12.5M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        RNAi-gam-2_U
        3.8M
        2.9M
        77.5%
        2.7M
        71.9%
        0.2M
        121.0bp
        120.6bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        RNAi-gam-3_P
        23.6M
        22.5M
        95.2%
        21.6M
        91.3%
        0.9M
        296.0bp
        295.0bp
        18.1M
        17.6M
        17.8M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        RNAi-gam-3_U
        4.1M
        4.0M
        96.2%
        3.7M
        91.0%
        0.2M
        120.0bp
        120.5bp
        1.2M
        1.2M
        1.2M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-S5-1_P
        19.1M
        17.9M
        93.9%
        16.9M
        88.9%
        1.0M
        296.0bp
        295.2bp
        13.9M
        13.6M
        13.6M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-S5-1_U
        4.0M
        3.8M
        94.8%
        3.6M
        88.0%
        0.3M
        119.0bp
        119.7bp
        1.1M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-S5-2_P
        21.4M
        19.9M
        93.2%
        18.7M
        87.4%
        1.2M
        296.0bp
        295.4bp
        15.8M
        15.5M
        15.5M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-S5-2_U
        4.0M
        3.8M
        93.7%
        3.5M
        86.5%
        0.3M
        120.0bp
        120.0bp
        1.1M
        1.1M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-S5-3_P
        20.7M
        18.1M
        87.5%
        16.9M
        81.6%
        1.2M
        296.0bp
        295.5bp
        14.4M
        14.1M
        14.2M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-S5-3_U
        3.2M
        2.8M
        87.3%
        2.5M
        79.8%
        0.2M
        120.0bp
        120.5bp
        0.8M
        0.8M
        0.8M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-WYS-2_P
        18.9M
        18.2M
        96.3%
        17.5M
        92.9%
        0.7M
        296.0bp
        294.9bp
        15.2M
        14.8M
        14.9M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-WYS-2_U
        3.5M
        3.4M
        97.3%
        3.2M
        92.3%
        0.2M
        121.0bp
        120.8bp
        1.1M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-WYS-3_P
        19.2M
        18.4M
        96.0%
        17.7M
        92.4%
        0.7M
        296.0bp
        295.5bp
        15.1M
        14.8M
        14.9M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-WYS-3_U
        3.4M
        3.3M
        96.8%
        3.1M
        91.6%
        0.2M
        118.0bp
        118.3bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-male-gam-1_P
        20.3M
        19.4M
        95.5%
        18.7M
        92.2%
        0.7M
        296.0bp
        295.3bp
        16.8M
        16.3M
        16.5M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-male-gam-1_U
        3.5M
        3.4M
        96.7%
        3.2M
        92.0%
        0.2M
        119.0bp
        119.2bp
        1.1M
        1.0M
        1.1M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-male-gam-2_P
        22.5M
        21.5M
        95.5%
        20.8M
        92.0%
        0.8M
        296.0bp
        295.6bp
        18.4M
        17.8M
        18.0M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-male-gam-2_U
        3.2M
        3.1M
        96.2%
        3.0M
        91.4%
        0.2M
        120.0bp
        120.0bp
        1.0M
        1.0M
        1.0M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-male-gam-3_P
        23.8M
        22.7M
        95.3%
        21.9M
        91.7%
        0.8M
        296.0bp
        295.1bp
        18.3M
        17.6M
        17.9M
        0.3M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-male-gam-3_U
        3.8M
        3.6M
        96.1%
        3.5M
        91.2%
        0.2M
        118.0bp
        118.6bp
        1.1M
        1.0M
        1.1M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.5bp
        0.0%
        1.2bp
        WT-mature-herm-1_P
        22.0M
        15.2M
        68.9%
        11.0M
        50.1%
        4.1M
        297.0bp
        295.9bp
        8.9M
        8.7M
        8.8M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.5bp
        0.0%
        1.4bp
        WT-mature-herm-1_U
        4.1M
        2.5M
        61.7%
        1.9M
        46.4%
        0.6M
        125.0bp
        124.7bp
        0.6M
        0.6M
        0.6M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.5bp
        WT-mature-herm-2_P
        19.4M
        14.3M
        73.4%
        12.7M
        65.3%
        1.6M
        296.0bp
        295.2bp
        11.5M
        11.3M
        11.3M
        0.2M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-mature-herm-2_U
        3.1M
        2.3M
        73.3%
        2.0M
        65.1%
        0.3M
        121.0bp
        121.3bp
        0.7M
        0.7M
        0.7M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.2bp
        WT-mature-herm-3_P
        23.7M
        15.7M
        66.2%
        10.7M
        45.2%
        5.0M
        297.0bp
        295.9bp
        9.3M
        9.1M
        9.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.5bp
        0.0%
        1.4bp
        WT-mature-herm-3_U
        5.0M
        2.9M
        58.3%
        2.1M
        41.8%
        0.8M
        123.0bp
        123.7bp
        0.7M
        0.7M
        0.7M
        0.0M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.4bp

        Alignment Scores

        Created with MultiQC